running build running config_cc INFO: unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc INFO: unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src INFO: build_src INFO: building extension "barotropic" sources INFO: f2py options: [] INFO: f2py:> /var/folders/sg/bjgd139d48v526p07tp867mh0000gn/T/tmpbxyl4bch/src.macosx-10.9-x86_64-3.9/barotropicmodule.c creating /var/folders/sg/bjgd139d48v526p07tp867mh0000gn/T/tmpbxyl4bch/src.macosx-10.9-x86_64-3.9 Reading fortran codes... Reading file 'barotropic.f90' (format:free) Post-processing... Block: barotropic Block: velocity Block: ubar Block: vbar Post-processing (stage 2)... Block: barotropic Block: unknown_interface Block: velocity Block: ubar Block: vbar Building modules... Building module "barotropic"... Constructing F90 module support for "velocity"... Constructing wrapper function "velocity.ubar"... outdat = ubar(dat,outdat,z_w,z_wu,[nroms,ii,jj,xi_rho,eta_rho,overwrite_dat,overwrite_outdat,overwrite_z_w,overwrite_z_wu]) Constructing wrapper function "velocity.vbar"... outdat = vbar(dat,outdat,z_w,z_wv,[nroms,ii,jj,xi_rho,eta_rho,overwrite_dat,overwrite_outdat,overwrite_z_w,overwrite_z_wv]) Wrote C/API module "barotropic" to file "/var/folders/sg/bjgd139d48v526p07tp867mh0000gn/T/tmpbxyl4bch/src.macosx-10.9-x86_64-3.9/barotropicmodule.c" Fortran 90 wrappers are saved to "/var/folders/sg/bjgd139d48v526p07tp867mh0000gn/T/tmpbxyl4bch/src.macosx-10.9-x86_64-3.9/barotropic-f2pywrappers2.f90" INFO: adding '/var/folders/sg/bjgd139d48v526p07tp867mh0000gn/T/tmpbxyl4bch/src.macosx-10.9-x86_64-3.9/fortranobject.c' to sources. INFO: adding '/var/folders/sg/bjgd139d48v526p07tp867mh0000gn/T/tmpbxyl4bch/src.macosx-10.9-x86_64-3.9' to include_dirs. copying /Users/iriskeizer/opt/anaconda3/envs/model2roms/lib/python3.9/site-packages/numpy/f2py/src/fortranobject.c -> /var/folders/sg/bjgd139d48v526p07tp867mh0000gn/T/tmpbxyl4bch/src.macosx-10.9-x86_64-3.9 copying /Users/iriskeizer/opt/anaconda3/envs/model2roms/lib/python3.9/site-packages/numpy/f2py/src/fortranobject.h -> /var/folders/sg/bjgd139d48v526p07tp867mh0000gn/T/tmpbxyl4bch/src.macosx-10.9-x86_64-3.9 INFO: adding '/var/folders/sg/bjgd139d48v526p07tp867mh0000gn/T/tmpbxyl4bch/src.macosx-10.9-x86_64-3.9/barotropic-f2pywrappers2.f90' to sources. INFO: build_src: building npy-pkg config files running build_ext INFO: customize UnixCCompiler INFO: customize UnixCCompiler using build_ext INFO: get_default_fcompiler: matching types: '['gnu95', 'nag', 'nagfor', 'absoft', 'ibm', 'intel', 'gnu', 'g95', 'pg']' INFO: customize Gnu95FCompiler INFO: Found executable /Users/iriskeizer/opt/anaconda3/envs/model2roms/bin/x86_64-apple-darwin13.4.0-gfortran INFO: Found executable /Users/iriskeizer/opt/anaconda3/envs/model2roms/bin/x86_64-apple-darwin13.4.0-ld INFO: Found executable /Users/iriskeizer/opt/anaconda3/envs/model2roms/bin/x86_64-apple-darwin13.4.0-ar INFO: Found executable /Users/iriskeizer/opt/anaconda3/envs/model2roms/bin/x86_64-apple-darwin13.4.0-ranlib INFO: customize Gnu95FCompiler INFO: customize Gnu95FCompiler using build_ext INFO: building 'barotropic' extension INFO: compiling C sources INFO: C compiler: x86_64-apple-darwin13.4.0-clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/iriskeizer/opt/anaconda3/envs/model2roms/include -fPIC -O2 -isystem /Users/iriskeizer/opt/anaconda3/envs/model2roms/include -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -isystem /Users/iriskeizer/opt/anaconda3/envs/model2roms/include -D_FORTIFY_SOURCE=2 -isystem /Users/iriskeizer/opt/anaconda3/envs/model2roms/include -ftrapping-math creating /var/folders/sg/bjgd139d48v526p07tp867mh0000gn/T/tmpbxyl4bch/var creating /var/folders/sg/bjgd139d48v526p07tp867mh0000gn/T/tmpbxyl4bch/var/folders creating /var/folders/sg/bjgd139d48v526p07tp867mh0000gn/T/tmpbxyl4bch/var/folders/sg creating /var/folders/sg/bjgd139d48v526p07tp867mh0000gn/T/tmpbxyl4bch/var/folders/sg/bjgd139d48v526p07tp867mh0000gn creating /var/folders/sg/bjgd139d48v526p07tp867mh0000gn/T/tmpbxyl4bch/var/folders/sg/bjgd139d48v526p07tp867mh0000gn/T creating /var/folders/sg/bjgd139d48v526p07tp867mh0000gn/T/tmpbxyl4bch/var/folders/sg/bjgd139d48v526p07tp867mh0000gn/T/tmpbxyl4bch creating /var/folders/sg/bjgd139d48v526p07tp867mh0000gn/T/tmpbxyl4bch/var/folders/sg/bjgd139d48v526p07tp867mh0000gn/T/tmpbxyl4bch/src.macosx-10.9-x86_64-3.9 INFO: compile options: '-DNPY_DISABLE_OPTIMIZATION=1 -I/var/folders/sg/bjgd139d48v526p07tp867mh0000gn/T/tmpbxyl4bch/src.macosx-10.9-x86_64-3.9 -I/Users/iriskeizer/opt/anaconda3/envs/model2roms/lib/python3.9/site-packages/numpy/core/include -I/Users/iriskeizer/opt/anaconda3/envs/model2roms/include/python3.9 -c' INFO: x86_64-apple-darwin13.4.0-clang: /var/folders/sg/bjgd139d48v526p07tp867mh0000gn/T/tmpbxyl4bch/src.macosx-10.9-x86_64-3.9/barotropicmodule.c INFO: x86_64-apple-darwin13.4.0-clang: /var/folders/sg/bjgd139d48v526p07tp867mh0000gn/T/tmpbxyl4bch/src.macosx-10.9-x86_64-3.9/fortranobject.c /var/folders/sg/bjgd139d48v526p07tp867mh0000gn/T/tmpbxyl4bch/src.macosx-10.9-x86_64-3.9/barotropicmodule.c:116:12: warning: unused function 'f2py_size' [-Wunused-function] static int f2py_size(PyArrayObject* var, ...) ^ 1 warning generated. INFO: compiling Fortran 90 module sources INFO: Fortran f77 compiler: /Users/iriskeizer/opt/anaconda3/envs/model2roms/bin/x86_64-apple-darwin13.4.0-gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -march=core2 -mtune=haswell -ftree-vectorize -fPIC -fstack-protector -O2 -pipe -isystem /Users/iriskeizer/opt/anaconda3/envs/model2roms/include -O3 -funroll-loops Fortran f90 compiler: /Users/iriskeizer/opt/anaconda3/envs/model2roms/bin/x86_64-apple-darwin13.4.0-gfortran -Wall -g -fno-second-underscore -fPIC -march=core2 -mtune=haswell -ftree-vectorize -fPIC -fstack-protector -O2 -pipe -isystem /Users/iriskeizer/opt/anaconda3/envs/model2roms/include -O3 -funroll-loops Fortran fix compiler: /Users/iriskeizer/opt/anaconda3/envs/model2roms/bin/x86_64-apple-darwin13.4.0-gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -march=core2 -mtune=haswell -ftree-vectorize -fPIC -fstack-protector -O2 -pipe -isystem /Users/iriskeizer/opt/anaconda3/envs/model2roms/include -O3 -funroll-loops INFO: compile options: '-I/var/folders/sg/bjgd139d48v526p07tp867mh0000gn/T/tmpbxyl4bch/src.macosx-10.9-x86_64-3.9 -I/Users/iriskeizer/opt/anaconda3/envs/model2roms/lib/python3.9/site-packages/numpy/core/include -I/Users/iriskeizer/opt/anaconda3/envs/model2roms/include/python3.9 -c' extra options: '-J/var/folders/sg/bjgd139d48v526p07tp867mh0000gn/T/tmpbxyl4bch/ -I/var/folders/sg/bjgd139d48v526p07tp867mh0000gn/T/tmpbxyl4bch/' INFO: x86_64-apple-darwin13.4.0-gfortran:f90: barotropic.f90 INFO: compiling Fortran sources INFO: Fortran f77 compiler: /Users/iriskeizer/opt/anaconda3/envs/model2roms/bin/x86_64-apple-darwin13.4.0-gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -march=core2 -mtune=haswell -ftree-vectorize -fPIC -fstack-protector -O2 -pipe -isystem /Users/iriskeizer/opt/anaconda3/envs/model2roms/include -O3 -funroll-loops Fortran f90 compiler: /Users/iriskeizer/opt/anaconda3/envs/model2roms/bin/x86_64-apple-darwin13.4.0-gfortran -Wall -g -fno-second-underscore -fPIC -march=core2 -mtune=haswell -ftree-vectorize -fPIC -fstack-protector -O2 -pipe -isystem /Users/iriskeizer/opt/anaconda3/envs/model2roms/include -O3 -funroll-loops Fortran fix compiler: /Users/iriskeizer/opt/anaconda3/envs/model2roms/bin/x86_64-apple-darwin13.4.0-gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -march=core2 -mtune=haswell -ftree-vectorize -fPIC -fstack-protector -O2 -pipe -isystem /Users/iriskeizer/opt/anaconda3/envs/model2roms/include -O3 -funroll-loops INFO: compile options: '-I/var/folders/sg/bjgd139d48v526p07tp867mh0000gn/T/tmpbxyl4bch/src.macosx-10.9-x86_64-3.9 -I/Users/iriskeizer/opt/anaconda3/envs/model2roms/lib/python3.9/site-packages/numpy/core/include -I/Users/iriskeizer/opt/anaconda3/envs/model2roms/include/python3.9 -c' extra options: '-J/var/folders/sg/bjgd139d48v526p07tp867mh0000gn/T/tmpbxyl4bch/ -I/var/folders/sg/bjgd139d48v526p07tp867mh0000gn/T/tmpbxyl4bch/' INFO: x86_64-apple-darwin13.4.0-gfortran:f90: /var/folders/sg/bjgd139d48v526p07tp867mh0000gn/T/tmpbxyl4bch/src.macosx-10.9-x86_64-3.9/barotropic-f2pywrappers2.f90 INFO: /Users/iriskeizer/opt/anaconda3/envs/model2roms/bin/x86_64-apple-darwin13.4.0-gfortran -Wall -g -Wall -g -undefined dynamic_lookup -bundle -Wl,-pie -Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs -Wl,-rpath,/Users/iriskeizer/opt/anaconda3/envs/model2roms/lib -L/Users/iriskeizer/opt/anaconda3/envs/model2roms/lib /var/folders/sg/bjgd139d48v526p07tp867mh0000gn/T/tmpbxyl4bch/var/folders/sg/bjgd139d48v526p07tp867mh0000gn/T/tmpbxyl4bch/src.macosx-10.9-x86_64-3.9/barotropicmodule.o /var/folders/sg/bjgd139d48v526p07tp867mh0000gn/T/tmpbxyl4bch/var/folders/sg/bjgd139d48v526p07tp867mh0000gn/T/tmpbxyl4bch/src.macosx-10.9-x86_64-3.9/fortranobject.o /var/folders/sg/bjgd139d48v526p07tp867mh0000gn/T/tmpbxyl4bch/barotropic.o /var/folders/sg/bjgd139d48v526p07tp867mh0000gn/T/tmpbxyl4bch/var/folders/sg/bjgd139d48v526p07tp867mh0000gn/T/tmpbxyl4bch/src.macosx-10.9-x86_64-3.9/barotropic-f2pywrappers2.o -L/Users/iriskeizer/opt/anaconda3/envs/model2roms/lib/gcc/x86_64-apple-darwin13.4.0/9.3.0 -L/Users/iriskeizer/opt/anaconda3/envs/model2roms/lib/gcc/x86_64-apple-darwin13.4.0/9.3.0/../../.. -L/Users/iriskeizer/opt/anaconda3/envs/model2roms/lib/gcc/x86_64-apple-darwin13.4.0/9.3.0/../../.. -lgfortran -o ./barotropic.cpython-39-darwin.so ld: warning: -pie being ignored. It is only used when linking a main executable ld: unsupported tapi file type '!tapi-tbd' in YAML file '/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/lib/libSystem.tbd' for architecture x86_64 collect2: error: ld returned 1 exit status error: Command "/Users/iriskeizer/opt/anaconda3/envs/model2roms/bin/x86_64-apple-darwin13.4.0-gfortran -Wall -g -Wall -g -undefined dynamic_lookup -bundle -Wl,-pie -Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs -Wl,-rpath,/Users/iriskeizer/opt/anaconda3/envs/model2roms/lib -L/Users/iriskeizer/opt/anaconda3/envs/model2roms/lib /var/folders/sg/bjgd139d48v526p07tp867mh0000gn/T/tmpbxyl4bch/var/folders/sg/bjgd139d48v526p07tp867mh0000gn/T/tmpbxyl4bch/src.macosx-10.9-x86_64-3.9/barotropicmodule.o /var/folders/sg/bjgd139d48v526p07tp867mh0000gn/T/tmpbxyl4bch/var/folders/sg/bjgd139d48v526p07tp867mh0000gn/T/tmpbxyl4bch/src.macosx-10.9-x86_64-3.9/fortranobject.o /var/folders/sg/bjgd139d48v526p07tp867mh0000gn/T/tmpbxyl4bch/barotropic.o /var/folders/sg/bjgd139d48v526p07tp867mh0000gn/T/tmpbxyl4bch/var/folders/sg/bjgd139d48v526p07tp867mh0000gn/T/tmpbxyl4bch/src.macosx-10.9-x86_64-3.9/barotropic-f2pywrappers2.o -L/Users/iriskeizer/opt/anaconda3/envs/model2roms/lib/gcc/x86_64-apple-darwin13.4.0/9.3.0 -L/Users/iriskeizer/opt/anaconda3/envs/model2roms/lib/gcc/x86_64-apple-darwin13.4.0/9.3.0/../../.. -L/Users/iriskeizer/opt/anaconda3/envs/model2roms/lib/gcc/x86_64-apple-darwin13.4.0/9.3.0/../../.. -lgfortran -o ./barotropic.cpython-39-darwin.so" failed with exit status 1