From what I’ve seen, this issue has been around since macOS 13 and can be reproduced reliably. It happens with some apps like Music, Notes, and Google Chrome.
Here’s how to see it:
1.Make sure “Minimize windows into application” is enabled in System Settings, or just open a minimized app later directly from its application icon.
2.Open one of the apps mentioned above.
3.Minimize it.
4.Click the minimized app in the Dock to restore it. You’ll notice the GUI flashes for a moment and the minimize animation plays again.
Some additional info here: https://forums.macrumors.com/threads/weird-glitches-during-restore-from-minimalization-of-any-app.2370260/
A video clipped from another GitHub issue:
https://private-user-images.githubusercontent.com/13177224/445474477-36d8c784-9588-4186-8b6a-875c4077ce1c.mp4?jwt=eyJ0eXAiOiJKV1QiLCJhbGciOiJIUzI1NiJ9.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.xbAxdTgxadCVCZPsnZkhx9HnVbjP-D5w1GfPTBatIWQ