Application loader Xcode beta version warning

I currently am trying to submit my final build of an app to the App Store. However every time I try to submit the build iTunes connect throws an error saying that all apps must be built with Xcode 5.1.1 and later. I tried uploading through Application Loader to see if that would make a difference rather than through Xcode and Application Loader gave me a warning saying I had built the app with a beta version of Xcode. The strange thing is that I'm using the current release version of Xcode, Xcode 6.4. I really need to know what is causing this so I can submit my app to the App Store on time. Thanks in advance for any reply!

What version AL?


Did you touch that project with a beta Xcode?


Which version OS X are you on?

I'm currently running Application Loader 3.0. However I'm on OS 10.11. I had even generated a new project with Xcode 6.4 and migrated the code and I still get this warning. The strange thing is I've been on the 10.11 beta for a while and I haven't gotten this warning before.

Application loader Xcode beta version warning
 
 
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